PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn006251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 376aa    MW: 42496.5 Da    PI: 4.6476
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn006251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.2e-1918108199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k +++s+v++  +l++pk+f++ h ++k+ + t++l des ++++vk+ ++k++    l++GW++F+ a++L e+D++vF+l+++ +f  +v ++r+
  Achn006251  18 FVKLMLQSHVTRGFWLSFPKQFCDLH-LPKH-DDTVILVDESDEQYKVKYLVEKNG----LSGGWRGFAIAHKLLERDVLVFQLVQHCKF--KVYIVRA 108
                 89*********************888.4443.459***************777777....*************************99999..8888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2112109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-2414110IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-2616107No hitNo description
PfamPF023624.4E-1718108IPR003340B3 DNA binding domain
SMARTSM010191.5E-2418109IPR003340B3 DNA binding domain
PROSITE profilePS5086312.40718109IPR003340B3 DNA binding domain
PfamPF052665.0E-9253364IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKRSQEVQAN LAAEFPSFVK LMLQSHVTRG FWLSFPKQFC DLHLPKHDDT VILVDESDEQ  60
YKVKYLVEKN GLSGGWRGFA IAHKLLERDV LVFQLVQHCK FKVYIVRANG LTEIDGAIAL  120
LTLDACVKPM DVDQTEKDMT IYGEGEKCSE SLSVDFHQCN VEENGMFTLS TVAEQPGNDS  180
DEFGSEVLEG IRFSESSVDF KDINSIENFT ILVDGLVIDS EIPPHLQSKY YELCCSQNAF  240
LHDHLLDGLN CKLAAGIICE TVNIADAIRA SKLTTSRDNF TTWDNTLKAF EKLGMNVKFL  300
CARLDRLVSF AFDSERVLES KRVERVQAEE EIRTLEAKLL QVKELMKNLD EEIDGLKGKN  360
KMLEVKFCEE ANAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778966.11e-158PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLM1BY601e-150M1BY60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000555711e-150(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein